Nextflow workflow report

[fabulous_mclean]

Workflow execution completed successfully!
Run times
11-Jun-2021 21:40:41 - 12-Jun-2021 15:13:35 (duration: 17h 32m 54s)
  1945 succeeded  
  0 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow run main.nf --primary_assembly /project/ag100pest/Pgos/RawData/3-unzip/all_p_ctg.fasta --illumina_reads '/project/ag100pest/Illumina_polishing/JAMU*{R1,R2}.fastq.bz2' --pacbio_reads /project/ag100pest/Pgos/RawData/m54334U_190823_194159.subreads.bam --k 21 -resume
CPU-Hours
82.1
Launch directory
/lustre/project/isu_gif_vrsc/jenchang/github/refk
Work directory
/lustre/project/isu_gif_vrsc/jenchang/github/refk/work
Project directory
/lustre/project/isu_gif_vrsc/jenchang/github/refk
Script name
main.nf
Script ID
7742e64a2104a7772dbea4f64964cca9
Workflow session
f3c1ab2e-92d4-4d5f-9919-9822ef314a34
Workflow profile
standard
Nextflow version
version 20.07.1, build 5413 (24-07-2020 16:53 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)